The phrase "alignment on all" is not standard in written English and may cause confusion.
It could be used in contexts where you want to express agreement or consistency across multiple areas or aspects.
Example: "We need to ensure alignment on all departments regarding the new policy changes."
Alternatives: "consensus on everything" or "agreement across all".
In addition, a neighbour-joining tree was constructed based on alignment of all FLG2 repeats together with their representative homologous repeat units of filaggrin and hornerin, demonstrating different evolutionary histories for the A-type and B-type repeats (Fig. 3).
We have scored each splice site using a position-specific weight matrix (PWM) based on the alignment of all 5' and 3' splice sites in the C. elegans genome (Methods).
To perform a thorough search of Osiris genes, we built a profile HMM based on the alignment of all 24 Osiris proteins obtained from the aforementioned blast searches.
The template retrieves information from the database through a management system based on URL parameters, and reproduces the radial topology of a phylogenetic tree inferred based on the alignment of all the processed Jrof AMLR sequences reconstructed.
Polymorphic sites were determined manually based on an alignment of all haplotypes, and each haplotype was characterized by the number of sites by which it differed from the consensus sequence [ 69, 70].
Phylogenetic analyses in a more recent study were unfortunately based on an alignment of all four classes of the enzyme, that are very distantly related, and did not include any bootstrap support values [ 14], making them difficult to interpret.
Phylogenetic analysis based on multiple alignment of all reconstructed transcripts confirmed the closer genetic relatedness between first-degree relatives 'Late Vavilov' and 'Karadzhandal' (group I) and between the two accessions originating from Afghanistan ('Khalchili' and 'Husseine', group II).
Design of the primers and probe was based on an alignment of all available SAFV sequences in GenBank (www.ncbi.nlm.nih.gov/genbank) in July 2010 by using ClustalW (www.clustal.org) and Primer3 (http://frodo.wi.mit.edu/primer3) software.
In order to enable phylogenetic clustering we created a well-supported (bootstrap >80%) core-genome tree based on an alignment of all concatenated core genes (2018) of 19 strains using Mugsy [ 71].
In the procedure, a HMM built on the alignment of all family members is used to scan the parental genome and the detected sequences are aligned to the model.
