The phrase "alignment of where" is not standard in written English and may cause confusion.
It could be used in contexts discussing the coordination or agreement of locations or positions, but it lacks clarity.
Example: "The alignment of where the two teams will meet is crucial for the project's success."
Alternatives: "coordination of locations" or "agreement on positions".
The first pair and one member of the second pair were due to an incorrect choice by the global alignment algorithm of where to place a gap caused by a homopolymer sequencing error, a rare occurrence, and the last was below the length cutoff of five that we used to detect homopolymer sequencing errors.
Therefore, it can only be applied to the alignment of sequences where the SV size is large enough for the algorithm to work in the non-classical mode.
Aim for horizontal alignment of frames where possible too - the one pictured here is an excellent example of drawing the horizontal theme across the wall.
Each read within a pair was mapped independently using the -x flag, so that each read is mapped to the position in the assembly with the best alignment score (regardless of where its mate was mapped).
The alignments of IGRs where convincing RNA structure could be identified were manually edited by RALEE [ 93].
To overcome a bias in alignment of short reads, where the reference allele reads are preferentially aligned over reads with the variant allele, we used a genomic reference containing IUPAC codes for SNPs in dbSNP.
A spokesperson for the Welsh government confirmed it was putting in £1.15m "to enhance alignment of the Wales Coast Path where practicable and to ensure that the path remains of a consistently high quality".
However, MAQ does not support gapped alignment for single-end reads, which makes it unsuitable for alignment of longer reads where indels may occur frequently.
We calculated the measures by comparing automatic word alignment and manual word alignment of test sets where the quality of the automatic alignment is evaluated and the manual alignment is the gold standard.
Figure 2 (right), shows an alignment of two maps where the replaced (matched/mismatched) characters are put above each other and the units evolved by duplications are attached to arcs.
