Sentence examples for alignment of viral from inspiring English sources

HRV is a single-stranded, positive sense RNA virus and, despite the high level of conservation among different serotypes, sequence alignment of viral protease 3C with mammalian protease reveals no homology.

For each alignment of viral sequences from a tissue, we calculated the observed PHI and a null PHI distribution obtained from 1000 random alignments simulated under the null hypothesis of no recombination.

The algorithm uses a sliding window method to determine if a query sequence from an individual matches sequences in a background alignment of viral sequences derived from that individual and his partner.

Figure S4 : Alignment of viral RBD haplotypes from the population survey.

(G ) Multiple sequence alignment of viral and eukaryotic zinc fingers that preferentially bind adenosine rich (HMPV and RSV M2-1, Nab2) or adenosine-uridine rich sequences (TIS11d).

The alignment of viral transcriptomes and proteomes revealed gaps in viral annotation, including the detection and validation of novel viral genes.

Alignments of viral nucleotide sequences (see materials and methods) within each gene family resulted in the formation of multiple within-family subgroups based on sequence divergence.

When paired with the HLA binding prediction tool, BlockLogo is a useful tool for rapid assessing of immunological potential of selected regions in a MSA, such as alignments of viral sequences or tumor antigens.

Indeed, conceptually translated sequence alignment of these viral dsrC genes including putative viral and bacterial genes from microbial metagenomic data sets indicate that the Saanich Inlet 'viral' sequences belong to one dsrC subgroup (dsrC_1 according to the classification of Anantharaman et al., 2014).

Alternatively, the remaining reads can be aligned on a laptop using BLASTn to just the viral fraction of the NT database, followed by BLASTn alignment of the viral reads to the NT database to verify that they are correctly identified.

Variable positions in the alignment of the viral sequences involved in this recombination event are shown in Figure 10.