The phrase "alignment of the total" is correct and usable in written English.
It can be used in contexts where you are discussing the coordination or agreement of a complete set of elements or figures, often in business or analytical discussions.
Example: "The alignment of the total budget with our strategic goals is crucial for the project's success."
Alternatives: "synchronization of the overall" or "congruence of the entirety".
Estimated recombinants in the resulting alignments of the total haplotypes were 5.04% (Table 2).
Another approach of phylogenetic reconstruction was concatenating all alignments into a super-alignment of the total length of 390.024 amino acid residues.
These were compared with neighbor-joining trees constructed using BioNJ using 100 bootstrap replicates for alignments of the total kinome, or 500 replicates for individual groups of kinases.
Sequence coverage, gauged by comparing the total length of all alignments to the total length of all sequences in the OM set, was maximized by choosing a k-mer size of 39 (see Additional file 8: Figure S1).
The percent coverage per unigene was determined by dividing the number of bases covered by the mapped reads (including both the end to end and overlapping alignments) to the total number of bases of the respective unigenes.
A total of 97.4% alignments out of the total satisfied these conditions.
Four different attributes were calculated for each reference alignment, which reflect the overall difficulty of the alignment: the total number of sequences to be aligned, the average length of the sequences to be aligned, the norMD score which is an objective function for MSA based on the Mean Distance (MD) scores introduced in ClustalX [63].
For all reads where no one alignment spans 90% of the total read length, breseq examines all pairs of alignments reported between the read and the reference genome.
The edit distance of the alignment equals the total number of differences in A. A score can be calculated for an alignment given a scoring system.
