The phrase "alignment of the template" is correct and usable in written English.
It can be used when discussing the arrangement or positioning of elements within a template, often in design or formatting contexts.
Example: "Before finalizing the document, we need to ensure the alignment of the template is consistent throughout."
Alternatives: "template arrangement" or "template positioning".
Most importantly, by designing the geometry and the alignment of the templates, ordered arrays of columnar structures with pre-designed shapes can be fabricated under the intensified shadowing effect [12, 13].
First a structurally influenced alignment of the templates was generated using the salign function, and then the Pro3 sequence was appended and aligned.
The multiple sequence alignment (MSA) of the template and target GPCR sequences was produced using a two tier approach.
To reduce the length of the pairwise alignment to that of the template alignment, gaps must be removed from the pairwise alignment.
The discontinuous templates are clustered into one category if they have the same number of domains with same domain segments number and similar boundaries, where 'similar boundary' means that the difference in boundary positions is within ±5 residues after structure alignment of the two templates.
When the sum of the repeated bases at the 3' end of the discriminating oligonucleotide and the 5' end of the common oligonucleotide equals the number of repeated bases in the template HPT, the alignment of the oligos on the template favors the formation of a single-stranded ligation product with diagnostic size.
Firstly, ClustalW was used to create an automatic alignment of all of the template and target GPCR sequences [67].
The automated sequence alignment and analysis of the template and target was carried out using Espript2.2. 12 The Risler matrix was used to calculate the similarity score, with the similarity global score set to 0.7.
Thus by introducing local misalignments, the candidate sequence is globally aligned to the template alignment without disrupting the length of the template alignment.
