Sentence examples for alignment of the set from inspiring English sources

A basic and indispensable step in phylogenetic study is alignment of the set of homologous sequences [ 4].

We therefore performed a site-by-site analysis of dN/dS ratios based on the alignment of the set of 136 full-length intact coding sequences used above.

This could be done without requiring full multiple alignment of the set of structures, which is impractical if the number of structures is large.

Furthermore we use a subroutine BUILD_UPGMA (F') that takes a set F' of fragments as arguments and returns a tree and a subroutine MERGE p, F') that takes the parent node p and the set of fragments F' as argument and returns an alignment of the set of sequences represented by node p. Those two subroutines are described in the previous two subsections.

If the outer stem is a conserved match, a local alignment on the set of inner structure elements is used to find the base pair similarity score.

However, it cannot always be predicted from theory which set of parameters will result in optimum alignment of the data set and a small set of combinations needs to be evaluated.

Very high correlation of gene-level values comparing Bowtie and IndexDP alignments for the set of AS reads ruled out differences between alignment tools as the source of the observed biases.

It is one of the fastest programs available and produces global sequence alignments for the set of sequences from a family.

Then we made alignments for the set of random sequences QV and determined the number of sequences having insertions or deletions within the region from t1 to t2.

In this study, we have performed CoMFA studies on a training set of arylpiperazines (high affinity 5-HT1A receptor ligands) and to produce an effective alignment of the data set, a pharmacophore model was produced using Galahad.

The anchored ITS alignment of the data set using SATé featured 296 taxa and 1,094 aligned positions, including 140 constant characters, 75 parsimony-uninformative changes, and 879 (80%) parsimony-informative positions (Fig. 4).