Sentence examples for alignment of the retained from inspiring English sources

To estimate dn/ds ratio for each avian branch in the phylogeny, we ran the "free-ratio" model for a concatenate alignment of the retained genes.

The ANI score was calculated as the average alignment identity of the retained hits for each reciprocal pair.

If the contaminant is found within the read (C), the bases from the 5′ end of the read to the beginning of the alignment are retained.

To determine the degree of divergence of all three strains, only variable positions of the alignment were retained (no. sites = 116 aa) for calculation of an approximation of genome divergence.

In T L tests, voids ahead of the crack tip also grow in the loading direction, although a high degree of alignment is retained in the L direction.

The retained portion of each amino acid sequence alignment was then used jointly with DNA sequence information to generate nucleotide sequence alignments of genes.

Nevertheless, a high degree of alignment was retained even after the relaxation period.

Bayesian analysis of the same alignment retained the same topology and supported the same branches (data not shown).

Melting of the paraffinic crystallites happened within the 40 60°C temperature range with formation of a liquid-crystal phase in which side chains are molten but retain the alignment of the low temperature phase.

First, the alignment of the conformer to the reference shape was retained during shape fingerprint generation.

The data set used for phylogenetic analyses consisted of 2907 amino acids, with about 73% of the initial alignment of 3975 amino acids retained after Gblocks trimming of the 13 protein-coding alignments.