Sentence examples for alignment of the repeats from inspiring English sources

The strand invasion duplex sequence for the 5'Tail Telomeric (Tel) D-loop consisted of (TTAGGG 10 flanked by 12 bp of unique sequence to ensure proper alignment of the repeats.

In addition to the coordinates and sequences of the VR/TR pairs, the program also delivers an alignment of the repeats, statistical data on the adenine exchanges, and an annotation file that can be opened in a sequence viewer such as Artemis [ 11] to visualize the DGR structure (Additional file 3).

One hundred sequences for each of the five main repeat families plus the Oe51 family were selected from 454 reads as follows: a preliminary consensus sequence of each tandem repeat type was deduced by dot plot analysis of the contigs assembled by RepeatExplorer and the subsequent alignment of the repeat units using CLC-BIO with default parameters.

The protein had a high affinity (42% amino acids identical) with a gene family on chromosome 12 in Leishmania spp., (currently annotated as 'surface antigens'), and a more distant affinity with proteophosphoglycans. Figure 3b shows a sequence alignment of the repeat domain from the B. saltans protein and its leishmanial homologs, where the level of amino acid identity rises to 50%.

The alignments of the repeats of each CRISPR pairs were visualized with WebLogo version 3.0 (http://weblogo.threeplusone.com/create.cgi), a Web-based application that generates graphical representations (logos) of the patterns within a multiple sequence alignment [52].

First, I examined the alignments of the repeats from all species and identified a previously unrecognized conserved motif in the Piccolo and Bassoon family.

This was shown by simultaneous clustalW alignments of the repeats of the four chromosomes tested (1, 19, and two chromosome 5 homologues).

Alignments of the repeats found within the sequences are presented as an.aln file and are hyperlinked to their respective cell.

A graphical representation (sequence logo) of the multiple alignment of these repeats is shown in Fig. 4B.

An alignment of all the repeats identified by REPuter and separated by more than 1000 bp showed that Glycine dispersed repeats with high levels of sequence similarity are found in multiple locations in the chloroplast genome.

Both MUSCLE [ 44] and Probcons [ 45] were employed for multiple protein sequence alignments, with manual editing to improve alignments of the repeating LRRs and coiled-coils.