Sentence examples for alignment of the output from inspiring English sources
The pipeline (Supplementary Fig. S1) begins by running NextClip, followed by alignment of the output files for the four categories using BWA.
In fact, we have used the alignment of the Rd.HMM search output to guide the alignment of the target sequence and the template sequence in the homology modeling and this strategy seems to have given good results.
Users may examine the alignment of the sequences and the output tree topology, attempt to identify irrelevant sequences from the dataset and, then, resubmit the job.
The input required is the sequence or alignment, and the output consists of a list of the mutations with a corresponding disease prediction presented as a pathogenicity index that ranges from 0 to 1.
For each selenoprotein alignment, the output of the step above is a set of hits in the genomic sequence (genomic intervals), roughly corresponding to the exons of candidate selenoprotein genes (Fig. 1a).
In the case of the integrin α alignment, the output from ClustalW consisted of 2383 positions and was manually edited to 1091 positions (20 sequences).
Whether or not x and y will actually appear in the same column of the output alignment depends on the degree of local similarity among the sequences around positions x and y.
One result of our study is that anchor points can not only improve the biological quality of the output alignments but can in certain situations lead to alignments with significantly higher numerical scores.
The times used to calculate each speedup are elapsed times to carry out a sequence alignment, which start from the beginning of GPU-BLAST's execution and finish with the writing of the output alignments to a file.
The evaluations of the output alignments of hsa versus mmu and atc versus eco with regards to all 11 high-level metabolism categories are presented in Table 1.
If (b) is the case, the biological quality of the output alignments can be improved by using a more efficient optimisation algorithm.
