Sentence examples for alignment of the generated from inspiring English sources

The alignment of the generated short read data must be aligned accurately to use the prior genome scaffold in the presence of unknown base differences.

Bowtie2 v2.1.0 alignment software [ 54] was used for alignment of the generated RNA-seq reads with requirements of a perfect end-to-end and gapless alignment of seed substrings of 32-mers.

Alignment of the generated sequences to the SILV constitutive transcript confirmed previously detected transcripts and yielded an additional new series of transcripts with deleted exons: Δ363 – 1340 (lacking exon 4 – 6), Δ216 – 1340 (lacking exon 3 – 6) and Δ105 – 1340 (lacking exon 2 – 6).

Multiple alignments of the generated sequences with reference sequences from the HIV sequence database (Los Alamos National Laboratory) were performed using Clustal W [ 13].

The first step in analysing NGS data is mapping and alignment (alignment for short) of the generated small reads to a reference sequence.

Diversity is ensured by calculating the heavy-atom RMSD (after least-squares alignment) of the newly generated conformation to those previously stored.

Time-averaged residue-based Root Mean Square Fluctuations (RMSF), calculated after alignment of the MD generated structures with the average structure, are color-mapped onto the protein structures in Fig. 5.

In addition, we have modelled the server output to enable comprehensive visualisation of the generated alignment and easy figure generation for publications.

For an N-codon long alignment, we generated a non-redundant series of random numbers from 1 to N, and permuted codon columns (rows of codons in the same site of the alignment) according to the generated random numbers.

There are three major advantages of using Slider for the alignment of sequences generated by the Illumina Genome Analyzer and the detection of SNPs based on these alignments: Higher accuracy in SNPs prediction: by generating a smaller number of base mismatches, Slider's SNPs prediction is less likely to be confounded by sequence error within the reads.

Analysis of the generated alignment revealed a LTR of a retrotransposon.