Sentence examples for alignment of the dataset from inspiring English sources

The resulting sequence alignment was used as constraint to compute a structure-based alignment of the dataset using MAFFT [51] with L-INS-I –seed settings.

Notice that a strong activation appears in the ventricles, which obviously reveals variability in periventricular shape across animals, preventing a perfect alignment of the datasets in this region.

A multiple sequence alignment of this dataset was generated using the program MUSCLE (Edgar, 2004).

A multiple sequence alignment of this dataset was produced using the program MUSCLE.

The alignment of the same dataset was repeated with two well-known long reads alignment tools: BWA-MEM and BLASR.

The genome-wide search was conducted with an E-value threshold of 1e-3 in all organisms contained in the RyhB alignment of the aforementioned dataset.

Automated alignment of the complete dataset containing all S-alleles was performed using ClustalX [ 37] and manually adjusted using Se-Al v2.0 [ 38].

Our final alignment of the total dataset (12S, ATP8 and 6 and ND6) without gaps totalled 2179 base pairs, with 651 variable and 505 parsimony informative sites.

Correctness: we verified the correctness of SEAL by performing the alignment of the 5M dataset (Table 1) to the UCSC HG18 reference genome (Fujita et al., 2010) with both SEAL and BWA ver. 0.5.8c and then comparing their output.

The initial ancestral reconstruction assumed the background amino acid frequencies implicit in the LG matrix, while the alternative reconstruction estimated background frequencies from the sequence alignment of the alternative dataset.

Alignment of the combined dataset from PreSET and SET domains resulted in a matrix with length of 228 sites after removing ambiguous regions and autapomorphic insertions (see Additional file 3).