Sentence examples for alignment of the database from inspiring English sources

The latter can be accomplished by means of a forced alignment of the database from which the exemplars are selected with the states that correspond to a phonetic transcription.

UCHIME does not require a multiple alignment of the reference database.

We classified bacterial GluRSs into five groups (Table 2) based on a multiple sequence alignment of the entire database (Supplementary Figure S2).

The references sequences (Table S1) from other countries were downloaded from the HIV Los Alamos data base by accessing the HIV Sequence Alignments page of the database, and downloading 2008 HIV-1 subtype reference of corresponding to the HXB2 coordinates of the appropriate gene fragment.

Through the alignment of transcriptome database, the candidate unigene sequences and amino acid sequences of "late step genes" of RIN and IRN biosynthesis were obtained and showed in Additional file 1: Table S9.

Sequencing results were analyzed by BLAST search of the GenBank database and EMBOSS pairwise alignment of the EMBL-EBI database.

We assembled orthologous sequences from 10 other species by directly querying the net alignments of the UCSC Genome Browser database [35].

Andrea Tanzer analyzed known and novel RNA elements in the multiple alignments of the CORG database.

Paired end reads were aligned to the reference human genome of NCBI build 37 using the aligner ELNAD v2 (Efficient Large-Scale Alignment of Nucleotide Database) in the CASAVA pipeline.

The main advantage of this method is its independence of the pairwise network alignment algorithm the database employs.

For each CRISPR type in the 60 P. gingivalis isolates, protospacer-adjacent motifs (PAMs) were predicted from an alignment of the sequences in the databases exhibiting high nucleotide similarity to the spacer using WebLogo v3.3 (Crooks et al. 2004).