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The results obtained from the determination of the DNA sequences of the lid domain of combinatorially mutated enzymes indicated that the sequential alignment of the (basic amino acid)–(polar amino acid)–(non-polar amino acid) might be important for the function of the lid domain.
The amino acid sequence alignment of the basic and hinge regions reveals some highly conserved amino acid residues within each group (Supplementary Fig. S6).
Shown for GFP-Dia-BD is a global pairwise amino acid sequence alignment of the basic domain (BD) between Drosophila Dia and the mammalian homologue mDia1 (Needle, EMBOSS package, default parameters).
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The most recent binning algorithm Sort-ITEMS utilizes the bit score and alignment parameters of the basic local alignment search tool BLAST (Altschul et al. 1990) for an initial taxonomic classification.
We understand sustainability as both (1) the persistence of the social and economic living conditions in relation to post-disaster measures; and (2) the alignment of the measures with basic environmental aspects.
Sustainability implications of measures are captured by investigating the persistence of the social and economic living conditions in relation to post-disaster measures, and the alignment of the measures with basic environmental aspects.
The sagittal alignment of the pelvis represents the basic mechanism for maintaining postural equilibrium, and a number of methods were developed to assess normal and pathologic pelvic alignments from two-dimensional sagittal radiographs in terms of positional and anatomic parameters.
Unlike other alignment tools, the basic 'galign' alignment tool does not use the Smith-Waterman algorithm [6].
The sensitivity of the basic local alignment search tool (BLAST) has been increased in several ways.
Off-target effects were checked through the use of the basic local alignment search tool (BLAST) applied to the Drosophila genome and visual analysis of the results.
Additionally in VIRmiRNA sub database, outputs of the basic local alignment search tool (BLAST /Alignment of the seed and complete miRNA sequence with that of viral as well as cellular miRNAs are provided.
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