Sentence examples for alignment of structures from inspiring English sources

Archaeoastronomy, the alignment of structures with the heavens, is usually associated with such ancient wonders as Machu Picchu in Peru or Newgrange chamber in Ireland.

The alignment of structures was shown in Fig. 1.

Inspired by a recent technique developed to compare molecular shapes, we designed a hybrid methodology, alignment-recycling, that enables efficient retrieval and alignment of structures with similar 3D shapes.

A structural characterization of this transition to the inward-facing conformation was obtained with the RMSDTT algorithm [53] that performs an iterative alignment of structures, giving larger weight to regions that have small residue-based RMSDs.

Alignment of structures was restricted to the NADP-binding domains of the two proteins.

The model of the core catalytic domain is based alignments of structures 1AKZ (wild-type UNG2 residues 95 314), 1EMH (substrate complex) and 1SSP (product & product+U) [27].

It forms the western end of an alignment of three structures, the others being Structures 6 and 7. Structure 6 is a stepped rectangular platform forming the middle of the alignment on Terrace 3.

A convenient property of the method is that similar structures tend to have more reference shapes in common than dissimilar ones, thus far more CPU time is dedicated to the alignment of similar structures than for dissimilar structures.

We analyze the alignments of structure pairs for which rigid alignment methods returned short alignments as compared to the length of the smaller protein.

The alignment and the overall similarity of the two structures is then computed via dynamic programming optimizing this score over all alignments of structure positions.

Hence, it is reasonable to assume that the lack of secondary structure information in the PDB file for one or both structures will often decrease the accuracy of the LOCK alignment of those structures.