Sentence examples for alignment of reported from inspiring English sources
In addition, alignment of reported maize ESTs that matched with several 454 reads shows no bias of the 454 reads towards any end of a corresponding EST (i.e. 3' or 5' region).
The in silico prediction mentioned above was based on the alignment of the reported miRNAs of human, mouse and rat to the porcine genomic sequences.
After alignment of the reported MRE regions with UniGene cluster Hs.73793, the splicing-regulated MREs were identified as described above in relation to Figure 1.
To decide the correctness of reported alignments, we use the human rhesus pairwise alignments (rheMac2.hg19.all.chain) provided by UCSC.
Following Kolodny et al., (2005) we assessed geometric quality of reported alignments using the following measures: with R = RMSD and C = alignment coverage as above, L1 and L2the lengths of the two sequences and W0 a weighting parameter, here set to 1.5 as in Kolodny et al. (2005).
To generate an exhaustive mapping result, no threshold was fixed to limit the number of reported alignments per read.
The experimental 50 nt-reads were aligned on the S. cerevisiae reference sequence using the same program, mapreads, and the same parameters were used as for simulated 50 nt-reads: six mismatches were allowed and no threshold was fixed on the number of reported alignments.
Additional file 1: Genome alignments of plastomes reported in this paper using MAUVE.
Figure 4a demonstrates an example of alignment reported by DOMAIN between 10 yeast proteins and three worm proteins, in which nine of the yeast proteins (all except Nyv1) and all three worm proteins are known to be involved in the pathway of SNARE interactions in vesicular transport in KEGG (Kanehisa and Goto, 2000).
Unusually high densities of SNPs in some regions of the alignment were reported as further evidence of recombination.
For all reads where no one alignment spans 90% of the total read length, breseq examines all pairs of alignments reported between the read and the reference genome.
