Sentence examples for alignment of regions from inspiring English sources

Given a rooted phylogenetic tree and an ancestral sequence we generate evolved sequences for each internal and leaf node of the tree, along with a multiple sequence alignment of regions conserved throughout the simulated evolution.

Sequence alignment of regions 2 4 (Lonetto et al., 1992 ) of bacterial RNAP primary (Group I) σ subunits.

JEnsembl-mediated access to Compara data allows the discovery and alignment of regions of conserved synteny between species and SNP marker mappings can be retrieved from Variation datasources.

DOI: http://dx.doi.org/10.7554/eLife.08504.005 10.7554/eLiFigure04.006 Figure 1 figure supplement 3. Sequence alignment of regions 2 4 of selected bacterial RNAP primary (Group I) σ subunits.

In particular, we adapted the Smith Waterman algorithm (Smith and Waterman, 1981) to make it capable of comparing and detecting the best optimal local alignment of regions with similar sequences of TFBSs.

The JEnsembl API allows additional data exploration: for example the discovery of gene homologies and the identification and alignment of regions of conserved synteny between species (as shown in Fig. 6) or the retrieval of the coordinates of SNP Markers (e.g. dbSNP markers).

G(T) is the similarity function for global alignment of region T for DNA sequences from QT set.

10.7554/eLife.00290.011 Figure 4. Kif2a is regulated by importin α. (A ) Sequence alignment of region surrounding the nuclear localization signal (NLS) identified using PredictNLS program.

We produced alignments of regions 5' of the annotated translation start and 3' of the annotated translation stop site for each gene.

The utility hmmalign [hmmer-3.0b3 [ 90]] was used to create alignments of region 2 and region 4 of all Bc ATCC14579 primary alternative sigmas, which were manually inspected.

These were aligned using ClustalW and the alignment of repeat regions was examined manually.