Sentence examples for alignment of protein from inspiring English sources

A total of 34 full cDNA sequences of Actinopterygii CYP3 family genes were aligned using PAL2NAL [36] based on the alignment of protein sequences performed by ClustalX v1.83 [31].

Extended Data Fig. 4 Alignment of protein sequences of haemagglutinins from different subtypes of IAV.

Local alignment of protein sequences was done using the FASTA suite (http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml).shtml

Extended Data Fig. 8 Alignment of protein sequences of surface MHC-II α-chains from different species.

Lassmann, T., Frings, O. & Sonnhammer, E. L. Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features.

Extended Data Fig. 9 Alignment of protein sequences of surface MHC-II β-chains from different species.

Di Tommaso, P. et al. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

2. Bietz S, Rarey M. ASCONA: Rapid detection and alignment of protein binding site conformations.

The Needleman-Wunsch algorithm is a dynamic algorithm commonly used in bioinformatics to perform the global alignment of protein sequences.

Figure 2 Phylogenetic tree constructed based on the amino acid alignment of protein sequences of fungal Lcc genes.

To explore the evolutionary relationship between Arabidopsis and rice NCX proteins, multiple sequence alignment of protein sequences was performed using ClustalW2 program and phylogenetic tree was generated using MEGA6 software (Additional file 1: Figure S1).