Sentence examples for alignment of nucleotides from inspiring English sources
ρ (A r) reflects the alignment quality of the rth column in A, giving high scores for aligning nucleotides of the same type and penalizing alignment of nucleotides of different types or aligning nucleotides against gaps.
The complete alignment of nucleotides of the 7 Taenia mtDNAs was used to effect sliding window analyses using DnaSP v.5 [ 64].
For coding regions, we first translated each gene into amino acid residues, which are less divergent as changes occur at a lower rate of substitution, to serve as a "scaffold" for alignment of nucleotides using the program RevTrans [ 29].
(A ) Alignment of nucleotides in between positions 158,779 and 167,382 within 'contig 1' of three A. candida races (AcNc2, AcBoT and Ac2V) illustrating two recombination blocks coloured blue and green.
In alignment of nucleotide sequences with secondary structure the aligners that are aware of the secondary structure generally outperform those that rely on sequence data alone [41], such as ClustalW [42] and MUSCLE [43].
Protein sequences were aligned, and the resulting amino acid sequence alignments were used to guide the alignment of nucleotide coding sequences (CDSs).
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
Abascal, F., Zardoya, R. & Telford, M. J. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
After alignment of nucleotide sequences of both species, specific primer sets were designed from unchanging and variable gene segments.
The gene encoding mini-RCP is engineered by contiguous alignment of nucleotide sequences coding for selected epitopes of chicken RCP separated by leucyl alanine residues.
Whereas multiple alignments of rbcL gene sequences from the 19 accessions revealed 1.26% parsimony-informative sites with 0.68% interspecific sequence diversity, alignment of nucleotide sequences of amplicons representing the matK gene revealed 4.97% parsimony-informative sites and 2.81% interspecific sequence diversity.
