The phrase "alignment of nucleotide" is not entirely correct as it is missing a noun to clarify what is being aligned, such as "sequences" or "bases." You can use it in contexts related to genetics or molecular biology when discussing the arrangement or matching of nucleotides in sequences.
Example: "The alignment of nucleotide sequences is crucial for understanding evolutionary relationships among species."
Alternatives: "alignment of nucleotides" or "nucleotide sequence alignment."
Paired end reads were aligned to the reference human genome of NCBI build 37 using the aligner ELNAD v2 (Efficient Large-Scale Alignment of Nucleotide Database) in the CASAVA pipeline.
In alignment of nucleotide sequences with secondary structure the aligners that are aware of the secondary structure generally outperform those that rely on sequence data alone [41], such as ClustalW [42] and MUSCLE [43].
Protein sequences were aligned, and the resulting amino acid sequence alignments were used to guide the alignment of nucleotide coding sequences (CDSs).
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
Abascal, F., Zardoya, R. & Telford, M. J. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
After alignment of nucleotide sequences of both species, specific primer sets were designed from unchanging and variable gene segments.
ρ (A r) reflects the alignment quality of the rth column in A, giving high scores for aligning nucleotides of the same type and penalizing alignment of nucleotides of different types or aligning nucleotides against gaps.
The complete alignment of nucleotides of the 7 Taenia mtDNAs was used to effect sliding window analyses using DnaSP v.5 [ 64].
For coding sequences, the amino-acidic sequences were aligned and then the resulting alignments were back translated into multiple alignments of nucleotide sequences using the T-coffee reformat procedure.
Alignments of nucleotide and amino acid sequences were performed using CLUSTALW version 1.83 [35].
Most often, molecular phylogeny is based upon the analysis of alignments of nucleotide or amino acid sequences.
