Sentence examples for alignment of metabolic from inspiring English sources

We present our Constrained Alignment of Metabolic Pathways (CAMPways) algorithm designed for this purpose.

This section describes the methodology proposed for the pairwise comparison and alignment of metabolic pathways.

This paper presents a new methodology and tool for the pairwise comparison and alignment of metabolic pathways.

We propose a methodology for the pairwise comparison and alignment of metabolic pathways that aims at providing the largest conserved substructure of the pathways under consideration.

A massive re-alignment of metabolic pathways, mostly associated with catabolism, emerged as one of the interesting themes from this analysis.

To do so, the total number of shared alignments between each pair of metabolic maps was calculated, considering only those alignments with scores of ≤0.3.

Alignment of the E. coli metabolic network to those of other organisms identified enzymes whose genes were candidates for horizontal gene transfer [ 40].

These alignments were used to construct a similarity matrix where each cell corresponded to the count of the alignments shared by each pair of metabolic maps.

Motivation: Given a pair of metabolic pathways, an alignment of the pathways corresponds to a mapping between similar substructures of the pair.

Results: We consider the problem of providing one-to-many alignments of reactions in a pair of metabolic pathways.

This algorithm allows the systematic fragmentation of metabolic pathways for the alignment analysis, and it has been used to identify the shortest pathway between compounds in metabolic networks [ 21].