The phrase "alignment of length" is correct and usable in written English.
It can be used in contexts related to measurements, design, or any situation where the length of objects or elements needs to be coordinated or matched.
Example: "The alignment of length between the two beams is crucial for the structural integrity of the building."
Alternatives: "length coordination" or "length matching".
Step 1 considers an alignment of length L, which includes the region of interest (ROI).
The tree presented on Figure 8 was built from an alignment of length 165 aa, using a WAG+Γ model chosen with ProtTest [89] The complete OtV5 DNA sequence has been deposited in GenBank, accession number EU304328.
The sequences inherited the taxonomic annotation (down to genus level) of the best scoring RDP hit fulfilling the criteria of ≥95% identity over an alignment of length ≥180 bp.
The best scoring hit was selected to represent the pyrosequencing sequence if it displayed ≥95% identity (mean = 0.996 for approved reads) over an alignment of length ≥[query length 5 bp].
Thus, for a given alignment, the corresponding shortened alignment of length 10 is contained in the shortened alignment of length 25, which is contained in the shortened alignment of length 50, and so on.
Prior to analysis sites consisting of entirely missing data were removed leaving a final alignment of length 594,442 bp.
Instead, the estimated tree of Figure 3 has been used to generate 50 alignments of length m = 50, 100, 250 and 500.
Threshold of 20, 80 and 95 bootstrap support values are reported and sequence alignments of length in the range 1500 - 2000 bp (short seq).
Of these, almost 70% were alignments of length 50, nearly 70% contained 10 sequences, and approximately 60% had gap patterns 5 or 7 applied to them.
In the pairwise alignments of the five zebrafish ECRs (ECR 6, 7, 10, 11, 12) with their syntenic mouse and human sequences using BLAST [ 44], we observed 87 157 pairwise alignments of length ≥ 7 (depending on the specific pairwise alignment).
The data set contained 200 alignments of length at least 200 each generated from the SFF model (the same model parameters were used in the sampling and for the alignments).
