The phrase "alignment of genomes" is correct and usable in written English.
It can be used in contexts related to genetics, bioinformatics, or evolutionary biology when discussing the comparison or matching of genetic sequences from different organisms.
Example: "The alignment of genomes from various species provides insights into their evolutionary relationships and genetic diversity."
Alternatives: "genomic alignment" or "genome comparison".
There are other tools that allow the user to do other things in addition to the alignment of genomes.
Multiple sequence alignment of genomes of representative CVA2 strain 430895 and other human enterovirus A strains was generated by using ClustalX version 2.0 and edited manually.
Multiple sequence alignment of genomes was carried out and phylogenetic tree was constructed using HKY+G+T substitution model at 1000 bootstrap replicates.
The phastCons score is computed as the posterior probability for a nucleotide to be conserved given a multiple alignment of genomes and their phylogenetic tree [ 72].
Among these methods, there is a class of techniques [ 15– 17] which takes as input a sequence-based alignment of genomes and then runs a sliding window on the alignment.
A consequence of this is that along an alignment of genomes from different species the genealogy will change at each position where one of the genomes has experienced a crossover.
The Mauve progressive multiple genome aligner was used to provide comparative alignment of genome features from L. erinacea, A. radiata and O. kenojei (16, 17).
ANI values were calculated based on pairwise alignment of genome stretches using the JSpecies software with BLAST algorithm [ 17].
The efficiency of the programs used for the alignment of genome sequences can strongly improve the process of selection of human-specific SNPs.
Using alignment of genome maps to the hg38 in silico BspQI map (described below), genome maps that span across the entire N-base gaps were used to estimate the size of the N-base gaps.
A program designed to predict gene function by building gapped local alignment of genome contexts between prokaryotic genomes, followed by studying the conserved gene strings provided significant predictions, yet it could not cover the majority of genes either [ 33].
