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6 Multiple alignment of coding DNA from aligned amino acid sequences was done using RevTrans.
For the alignment of coding sequence, sequences were translated, aligned at the amino acid level, and then back-translated to produce alignments at the DNA level.
"Zoosemiotics" is an alignment of code-like, wall-mounted shapes with silvery surfaces that project surprising elegance, while "Symbolic Series" and adjacent units in the "Code X genome" multi-panel installation have a rich metallic gleam that lends weight to the subject.
Multiple alignment of coding regions was done using ClustalW [50] followed by hand alignments before removal of all gaps.
The 2% sequence differences between the EF1α and RPB1 genes in F. depauperata appear to be the result of transitions and synonymous substitutions, consistent with recent divergence of the two strains (alignment of coding regions shown in supporting File S1).
Multiple Sequence Alignment of coding sequences of AtCYP81D11 gene produced by CLUSTALW.
This method computes the alignment of coding nucleotide sequences with respect to their possible translations.
For example, consider the analysis of a multiple sequence alignment of coding DNA.
Multiple Sequence Alignment of coding sequences of AtUDP-glycosyltransferase gene produced by CLUSTALW.
File_3 includes each gene sequence alignment of coding region among the three species with guinea pig.
Alignment of coding sequences performed by ClustalX [ 47] was visually reviewed.
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