Sentence examples for alignment of candidate from inspiring English sources
Protein sequence alignment of candidate type I VGPC toxins alongside previously characterized toxin proteins.
The alignment of candidate centromere position between papaya X chromosome and the orthologous autosome of V. monoica is in line with this conclusion.
Satellite repeat analysis was performed by searching for the repeats in the DM sequence at http://yh.genomics.org.cn/potato/search.jsp and by evaluating the repeat coverage through dot plot alignment of candidate DM sequences with the repeat sequence.
The pipeline incorporates the NCBI tools platform (Wheeler et al., 2008), the blast program (Altschul et al., 1990) for similarity searching of sequences, t- coffee (Notredame et al., 2000) for alignment of candidate sequences with the template, the modeller program (Eswar et al., 2003) for model assembly and the dssp algorithm (Kabsch and Sander, 1983) for secondary structure validation.
The alignment of candidates to known experimentally annotated RNR sequences also provides an initial indication of potential presence of self-splicing introns and inteins in the RNRs.
For each of the OR promoter regions, we obtained multiz/TBA sequence alignments of candidate orthologous sequences from up to 20 placental mammals via the UCSC Genome Browser.
Multiple sequence alignments of candidate transcripts and their respective homologs were generated using the E-INS-i algorithm in MAFFT v7.0 [ 52].
Third, because it finds ortholog families using all pairwise alignments of candidate orthologs, rather than by a reciprocal or circular BLAST search, it also minimizes the problem of hidden paralogy [ 49].
Amino acid alignments of candidates belonging to individual enzyme classes were performed with the in-built Muscle alignment feature of Geneious (Biomatters, Aukland, New Zealand).
Using multiple reference sequences as a basis for the alignment of the candidate sequences significantly improves alignment quality.
The new aspect in this step is the computation of an alignment of each candidate sequence to the current model.
