Sentence examples for alignment of c from inspiring English sources

Given two contact maps matrices, C and D, our goal is to find the alignment of C and D that maximizes the overlap between interacting residues.

The Ser/Thr residue at the pY+1 position is partially conserved in a sequence alignment of c-Cbl binding peptides and, while the phosphorylation of the serine residues Ser1070 and Ser1071 are essential for the regulation of EGFR expression [15], the importance of phosphorylation of the pY+1 Thr56 on Spry2 is less-well understood [24].

(E ) Sequence alignment of C-terminal portions of human (h) and murine PPP1R15A (mR15andand PPP1R15B (mR15B) and Drosophila dPPP1R15 (dR15) with regions of homology boxed.

Amino acid sequence alignment of C-termini of different β1a subunits revealed the conservation of the previously described [22] β1a-specific heptad repeat motif (LVV) from fish to human (Fig. 1B).

We also re-sequenced two positions (second and third entries of Table 1, BOD scores 0.63 and 0.62, respectively, graph shown in Fig. 2) where the deviation in sequence allowed neither local alignment of C-100 reads, nor of reads from the C-90 data set, because of a small insertion.

To explore whether non-N-R classes such as C-R were more widely distributed than in the nine species examined using the pipeline, we used an alignment of C-R class bZIP domains collected from P. sojae, P. ramorum, and P. infestans to construct an HMM and used the HMM to query the UniProtKB protein sequence database (http://www.uniprot.org), using the "hmmsearch" tool at the HMMER Web server [ 30].

Reliable multiple alignments of C-subunit sequences are difficult to attain as long as no 3D-structures are available.

Therefore, we created amino acid sequence alignments of c-Myc and topo II α using the website http://blast.ncbi.nlm.nih.gov/Blast.cgi CMD=Web&PAGE_TYPE=BlastHome.nih.gov/Blast.cgi CMD=Web&PAGE_TYPE=BlastHome

(C ) Sequence alignment of the C-terminal half of the Drosophila Elba1, Elba2 and a third Drosophila Ben protein Insv (Insensitive).

(B ) Sequence alignment of the C terminus of human Kif2a, Kif2b, and MCAK/Kif2c.

The protein alignment of the C and D lineages of the AGAMOUS family from different plant families and the construction of a phylogram showed that these lineages evolved from a common ancestor during angiosperm evolution [ 36] (Additional file 6).