The phrase "alignment of bacterial" is not correct as it is incomplete.
It should be "alignment of bacterial species" or "alignment of bacterial sequences" to be usable in written English. You can use it in contexts related to microbiology or genetics when discussing the arrangement or comparison of bacterial entities.
Example: "The alignment of bacterial sequences revealed significant genetic similarities among the strains."
Alternatives: "arrangement of bacteria" or "comparison of bacterial" or "alignment of bacterial genomes."
Multiple sequence alignment of bacterial-type tRNase ZSs from the basal plant P. patens (PpaTRZ3) and green algae reveals that in addition to the well conserved Motifs I-V, these candidates possess a bacterial-type flexible arm containing the GP, HEAT and HST motifs, and the variant PxKxRN motif, in which Lys is replaced with Leu.
To achieve this, we ran a benchmark of all-against-all pairwise alignments of bacterial RNAse P RNA secondary structure trees, using our tool's different tree-alignment modes and comparing the differences between the obtained alignment costs.
We thus obtained a eukaryotic signature in catalysis, whereas all sequences in the alignment are of bacterial origin, and we obtain typically thermophilic/hyperthermophilic stability enhancements although the sequences in the alignment belong to mesophilic or psychrophilic organisms.
We predicted the UGT1A1 secondary structure profile by using the neural network programs PSIPRED [ 75] and NNPREDICT [ 76], and aligned it to the structural alignment of known bacterial and plant GT-B crystal structures by using hidden Markov models (HMM) with manual adjustments [ 77].
Substitutions also were classified by the position-specific relative variability rate calculated from the consensus 23S rRNA model based on an alignment of 187 bacterial 23S rRNA genes [14].
The level of conservation of relevant β′ residues, determined from an alignment of 834 bacterial RNAP β′ subunit sequences (Lane and Darst, 2010) is tabulated in Table 2.
A multiple sequence alignment of the bacterial ALPs, highlights five main regions of conservation in the family (C1-C5 in Figure 1 and additional file 1).
The comparative RNA website (Cannone et al. 2002) hosts base pairing conservation values that were derived from an alignment of 326 bacterial, 312 mitochondrial, and 103 plastid rRNAs (Mears et al. 2002).
Litvak and Selinger [50] examined a multiple sequence alignment of 10 bacterial GAPs and found two short highly conserved motifs across the different species, together with four completely conserved leucine residues.
All proteins in the alignment are thus of bacterial origin and, furthermore, they happen to belong to mesophilic organisms or (in a few cases) to psychrophilic organisms.
