Exact(17)
The final alignment obtained by MP-Align is shown in Table 2.
Table 1 shows the reaction path alignment obtained by MP-Align when considering the Arginine and proline metabolism for H. Sapiens and M. Jannaschii.
The quality of alignment obtained by this algorithm depends heavily on choosing good pairs of corresponding points in the two datasets.
We compared collagen fiber alignment obtained by second harmonic generation (SHG) microscopy with the alignment obtained by diffusion tensor imaging (DTI) throughout the wall of a porcine carotid artery to check the feasibility of using DTI as a fast and non-destructive method instead of SHG.
Comparable to multifit-derived models, CoMFA and CoMSIA 3D-QSAR models were also derived using a molecular alignment obtained by docking latrunculin derivatives into the ATP active site of actin.
The figure on the left shows a superposition of SVR segments based on alignment obtained by using DALI.
Similar(43)
Estimates of synonymous and non-synonymous substitution rates for Akirin1 and Akirin2 were performed using codon-alignments obtained by loading aligned amino acid and corresponding nucleotide sequences into PAL2NAL [ 62].
These theoretical alignments, obtained by a method to be described later, are shown in the form of dotted lines.
The nucleotide alignments between functional paralogs are derived from the amino acid alignments obtained by MUSCLE [ 35].
Nonetheless, strikingly similar stories are clearly apparent in the sequence alignments obtained by Haft et al. [ 1] and previous reports.
However, the rest of the Clustal W alignment did not correspond to the alignments obtained by PSI-BLAST (data not shown).
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