The phrase "alignment number" is correct and usable in written English.
It can be used in contexts where a specific number is associated with alignment, such as in technical, engineering, or organizational settings.
Example: "Please refer to the alignment number in the report to ensure all components are correctly positioned."
Alternatives: "alignment code" or "alignment identifier".
Residue positions that were gapped in any of the aminergic GPCRs or positions for which no GPCRdb alignment number was available were discarded.
Number of links in original alignment, number of links in repeated alignment, number of links mutually included in both alignments and F-score.
All these observations are summarized in Additional file 8, where percent alignment, number of mismatches within the alignment and oligo alignment start position are plotted versus mean hybridization values and number of retained probes.
We have extended the previous "Benchmark RNA Alignment dataBase" BRAliBase II by a factor of 30 in terms of the alignment number and with respect to the range of sequences per alignment.
Although physiological structures such as spinal alignment, number of lumbar segments of the porcine spines are somewhat different from those of human cadaveric spines, however, animal spines are the most convenient choice to perform the experiment with long spinal segments on circumstance that human cadaveric spines can not be accessed.
LoQuM uses statistics on the read (base quality scores reported by the sequencer) and the alignment (number of matches, mismatches and deletions, mapping quality score returned by the alignment tool, if available, and number of mappings) as features for classification and uses simulated reads to learn a logistic regression model that relates these features to actual mapping quality.
The deduced VHH amino acid sequences were aligned according to the IMGT system (Lefranc 2004) for alignment, numbering, and complementarity-determining region (CDR) definition of immunoglobulins.
Numbers on top indicate the position in the alignment, numbers on the right indicate the position in each sequence.
Subsets of different alignment numbers were randomly sampled (with replacement) 10,000 times from alignments stored in the bam format (Li et al., 2009).
At this position (623-631; alignumberingbering), there were 21 distinct nonamer sequences representing the reported populations of both avian and human viruses.
Note: values refer to sequences without gaps/ambiguous alignment; numbers in parentheses are related to the non-recombining block for each locus.
