The phrase "alignment name" is correct and usable in written English.
It can be used in contexts related to categorization, organization, or specification of a particular alignment in various fields such as technology, design, or project management.
Example: "Please specify the alignment name for the new project to ensure everyone is on the same page."
Alternatives: "alignment title" or "alignment label".
ALN, alignment name; %INUC, percent of identical nucleotides agenes on the L strand Nucleotide conservation was strongest on the H strand, with trnC, trnG and trnM, having the highest levels of nucleotide conservation (%INUC > 50), followed by TrnE, trnL2, trnQ, trnS2, trnV and trnY at 40 ≤ %INUC ≤ 50.
The U.S. Highway parallels and then intersects the Snow Hill Line at grade and passes by the communities of Newark and Ironshire, which are served by sections of old alignment named Newark Road and Shire Drive, respectively.
This alignment (named maxspe) that maximized the mammalian representation for all sequences had a length of 77,328 nt (25,776 aa).
In a consistency-based algorithm, the reward for aligning two residues is estimated from a collection of pair-wise residue alignments named the library.
To address the limitations of exisiting algorithms we propose FlexSnap, a greedy algorithm for flexible sequential and non-sequential protein structural alignment (the name of the algorithm is a non-sequential permutation of the bold letters in Flexible non- Sequential protein alignment).
The un-rooted concatenation species phylogeny was inferred through a single ML search under the GTRGAMMA model in RAxML, version 8.0.20 (Stamatakis 2014), with the values of the nucleotide base frequencies fixed to "observed" and those of the substitution rate parameters estimated from the data (raxmlHPC-PTHREADS-SSE3 -T 8 -f a -x 12345 -p 12345 -N 100 -m GTRGAMMA -s ALIGNMENT -n NAME).
The configuration is a TAB-delimited text file where the first column contains the alignment file names; the second column contains the gene list names or BED file names; the third column contains the titles of the plots; the fourth and fifth columns are optional and contain fragment lengths and custom average profile colors, respectively.
In this article, we present a new whole-genome alignment tool, named Mugsy, which can rapidly align DNA from multiple whole genomes on a single computer.
To address this problem, we propose an improved alignment algorithm, named shape Dynamic Time Warping (shapeDTW), which enhances DTW by taking point-wise local structural information into consideration.
This includes information such as the length, coverage and PID of the alignment, template names and estimated quality of the models.
For each of the 89 genomic regions concatenated alignments of their respective CNEs were constructed based on the 26 mammalian genomes and each alignment is named after the reference gene.
