They showed that regions of optimal alignment, recurring most frequently in suboptimal alignments, were very similar to alignments produced by the structural alignment methods.
Read alignment errors occur most frequently in genes with polymorphisms between CAST and NCBIM37, especially in genes with closely related gene family members or retrotransposed pseudogenes.
Additional file 4: Figure S2 shows the alignment of the most frequently recovered member of the clone with the corresponding germline VH, DH, and JH sequences.
A consensus sequence was derived from the multiple sequence alignment by selecting the most frequently appeared amino acid at each position.
For alternative codons that do align to protein domains, RF2 assigns the highest importance to the difference in alignment score between the first and second most frequently aligned AA.
Despite recent disagreement regarding the usefulness of this range [ 11, 12], mechanical limb alignment within ±3° of neutral is most frequently used as an acceptable range to assess the alignment of the lower limb after TKA.
Revision surgery must eliminate deforming forces, most frequently frontal plane alignment.
Sub-alignments were constructed for the 11 most frequently detected genera, also including the most similar reference sequences from GenBank or UNITE, in addition to congeneric basidiocarp reference sequences.
Overextended alignments include non-homologous sequences; they occur most frequently between sequences that are more closely related (>33% identity).
After alignment of these fragments with the CLV3 proprotein, two most frequently occurring termini, N-terminal Met39 and Arg70, were detected, suggesting internal cleavage sites located before Met39 and before Arg70.
Discrepant nucleotides were substituted with the most frequently employed nucleotides, as determined by consensus alignment.
