The phrase "alignment model of the" is correct and usable in written English.
It can be used in contexts related to frameworks, theories, or methodologies that involve aligning different elements or components.
Example: "The alignment model of the organization helps ensure that all departments are working towards the same goals."
Alternatives: "alignment framework of the" or "alignment strategy of the".
The results showed that in the real testing data set for WGBS, compared to Bowtie, an extra 11% of total reads could be mapped by using the local alignment model of Bowtie2.
Also, the interactive alignment model of dialogue assumes that speakers and listeners share representations, although this does not necessarily imply that the processes operating on them are also shared between modalities (Pickering and Garrod 2004).
map = mappability, acc = accuracy, local = local alignment model of Bowtie2, e2e = end-to-end alignment model of Bowtie2.
These values are calculated from patterns of amino acids in the alignment, models of sequence evolution, phylogenetic branch lengths, and site-specific replacement rates.
Alternatively, we can employ the local alignment models, instead of the global alignment models, which may enable to incorporate the partial homology information such as domain motifs of functional RNAs in order to further improve the secondary structure prediction of target sequences.
Even though such an alignment model ignores the intermediate evolutionary steps of genomic modifications, it can still act as a realistic model of the transcription process with structural alterations, allowing the alignment of chimeric transcripts containing introns/deletions, novel insertions, duplications, rearrangements and inversions.
The sampler places a statistical alignment model on each branch of the tree, and represents internal node sequences as a collection of gaps and Felsenstein wildcards [ 27].
Results were inputted into MODELLER [ 34] using a multiple alignment for modeling of the tertiary structure.
Existing vertical alignment models consider neither the side-slopes of the road nor the natural blocks like rivers, mountains, etc., in the construction area.
Another reason for putative phosphorylation sites being mapped to incompatible residue types is that automatic transfer of the modification annotation onto other sequence records depends on the accuracy of the multiple alignment models that define the domains.
