Sentence examples for alignment mode from inspiring English sources

The combined dataset comprising a total of 165 sequences was aligned with POA (version 2) in progressive alignment mode [62].

The aligner was run in end-to-end alignment mode.

Out of 102 million reads, 31million aligned to the transcriptome under single-end alignment mode.

On real data, BS-Seeker2 in the local alignment mode maps more reads than the other aligners.

To align reads to the L1Hs consensus we used Bowtie2 local alignment mode (bowtie2 --no-unal -p 16 --locallocal -x L1Hs −1 pair1.fastq −2 pair2.fastq -S out.sam).sam

Reads were aligned using Bowtie 2 (Langmead and Salzberg 2012) in end-to-end alignment mode, reporting only the best match for each read.

Local alignment mode can soft-clip the reads to allow alignment, which helps align reads that may contain adjacent non-repetitive genomic sequence.

MCO456 reads were aligned onto C. orthopsilosis 90-125 chromosomes using Bowtie2 with "very sensitive local alignment" mode (Langmead and Salzberg 2012).

The 76 bp pair-end reads were filtered for quality as described above and aligned to genomic PST assemblies using Bowtie (version 0.12.7 [ 51]) in global alignment mode allowing a maximum of two mismatches (parameters: -v 2 --best -k 1).

The endwall alignment mode also has significant effect on the adiabatic film cooling level of the endwall surface.

The present research aims to numerically investigate the effects of the slot injection configuration and the endwall alignment mode on the film cooling performance of the endwall.