Sentence examples for alignment methods that from inspiring English sources

Note all alignment methods that utilize concave/piecewise gap penalty will face the same challenge.

Fortunately, new alignment methods that compare sequences from multiple species have been developed to minimize these drawbacks.

We have compared our approach with two other alignment methods that work with given RNA structures, namely RNAforester and RNA_align.

Results: We have compared ExpaRNA with two other alignment methods that work with given RNA structures, namely RNAforester and RNA_align.

Thus alignment methods that have been described previously [ 15- 17] using algorithms to compare structured knowledge sources could not be used.

For that reason, classic protein alignment methods, that rely on amino acid comparisons, fail to reveal the proteins' common origins in the case of divergence by frameshift.

In situations where automated programs fail to align these regions correctly, it is desirable to have an alignment method that would accept such user-defined homology information and would then align the remainder of the sequences automatically, respecting these user-specified constraints.

In this paper, we give an alignment method that makes more detailed use of the path of the projected center of mass along many cross-sections of the object, perpendicular to the axis of rotation.

I also tested blastn, a local alignment method that approximates the Smith-Waterman algorithm [20].

NETAL is another global graph alignment method that was developed by Neyshabur and colleagues [ 37].

To illustrate this, we assessed the performance of a simple alignment method that matches pairs within an ambiguous cluster by maximizing the total sequence similarity over matched pairs.