The phrase "alignment method that" is correct and usable in written English.
It can be used when discussing a specific technique or approach related to alignment in various contexts, such as data analysis, machine learning, or project management.
Example: "The alignment method that we implemented significantly improved the accuracy of our predictions."
Alternatives: "alignment technique that" or "alignment approach that".
In situations where automated programs fail to align these regions correctly, it is desirable to have an alignment method that would accept such user-defined homology information and would then align the remainder of the sequences automatically, respecting these user-specified constraints.
In this paper, we give an alignment method that makes more detailed use of the path of the projected center of mass along many cross-sections of the object, perpendicular to the axis of rotation.
I also tested blastn, a local alignment method that approximates the Smith-Waterman algorithm [20].
NETAL is another global graph alignment method that was developed by Neyshabur and colleagues [ 37].
IsoRank [ 41] is another multiple network alignment method that aims to correspond nodes and edges of input networks to maximize the global "match" between PPI networks.
To illustrate this, we assessed the performance of a simple alignment method that matches pairs within an ambiguous cluster by maximizing the total sequence similarity over matched pairs.
Fortunately, new alignment methods that compare sequences from multiple species have been developed to minimize these drawbacks.
Results: We have compared ExpaRNA with two other alignment methods that work with given RNA structures, namely RNAforester and RNA_align.
We have compared our approach with two other alignment methods that work with given RNA structures, namely RNAforester and RNA_align.
For that reason, classic protein alignment methods, that rely on amino acid comparisons, fail to reveal the proteins' common origins in the case of divergence by frameshift.
