Sentence examples for alignment maximum from inspiring English sources

For the whole database alignment maximum likelihood trees were calculated using the MPI version of raxmlHPC [24] on a Linux cluster of 32 PCs containing 32 AMD Opteron cpus.

Inclusion criteria were 15° fixed varus or valgus alignment maximum and an intact PCL.

Following alignment, maximum likelihood phylogenetic trees for PMEs and PMEIs were constructed.

After alignment, maximum daily duration of vitamin D synthesis explained 14.5% of the variation in serum 25(OH D levels, and vitamin D effective daily dose explained 14.8%.

To maximize the information content of our sequences and minimize the impact of missing data, the 559 single-copy orthologous groups were further filtered with stricter constraints on length (minimum 200 amino acids) and sequence alignment (maximum missing data 50% in the CDS alignments), and the resultant 276 groups were used for phylogenetic tree reconstruction.

After the alignment, maximum-likelihood (ML) analyses (HKY model) were performed with PhyML v3.0 [ 73], and bootstrap consensus values were calculated with 1000 bootstrap pseudoreplicates.

For each individual protein alignment, maximum-likelihood (ML) trees were inferred in RAxML v7.2.6 [ 46] using the LG + gamma distribution with four rate categories, with 10 ML tree searches and 100 ML bootstrap (MLBS) replicates.

Based on the alignments maximum likelihood trees were constructed using a slightly modified (removing limitation for memory usage - see Methods S6 for the patch file) version of phyml [28].

In summary, mycobacteriophage cluster relationships may be determined using either whole genomes in an alignment-free FFP analysis or predicted using single genes (such as TMP) in a global-alignment maximum likelihood analysis.

Using these alignments, maximum likelihood (ML) trees were inferred with PHYML v3.0 (Guindon and Gascuel 2003), using aproximate likelihood-ratio test nonparametric branch support based on a Shimodaira–Hasegawa-like procedure.

Phylogenetic tree construction was performed on the amino acid alignment using maximum parsimony and maximum likelihood methods with bootstrapping of 100 times.