Sentence examples for alignment location from inspiring English sources

For reads that were aligned into multiple locations (LTRs), we considered only one randomly selected alignment location.

Six criteria were used with this model: employment density, population density, feeder bus service, location on the alignment, location at a street intersection, and a minimum of ½ mile distance from the next station.

Chromosome, 454 sequence ID, alignment location, mismatch information, and gap information was parsed with a Perl script using BioPerl modules.

In all comparisons, we evaluate the ability of a method to sensitively and accurately find the correct candidate alignment location (CAL) for a given read during the global alignment step.

* Start and end of query sequence alignment location.

± Start and end of master circle sequence alignment location.

Like the original TopHat, potential splice sites are detected within candidate alignment locations, and used in a subsequent step to align reads spanning exon-junctions.

First, using multiple indexes of the reference genome, BFAST identifies candidate alignment locations (CALs) for each read.

The resulting output files include both gapped and ungapped contigs with quality scores, and an.ace file detailing the exact alignment locations of all reads.

Using an indexing approach, all the algorithms reduce the time complexity by trading off accuracy and completeness of the search for candidate alignment locations (CALs) to which local alignment is performed.

The new method is based on creating flexible, efficient whole genome indexes to rapidly map reads to candidate alignment locations, with arbitrary multiple independent indexes allowed to achieve robustness against read errors and sequence variants.