Sentence examples for alignment library from inspiring English sources

The authors provide an exhaustive assessment of the accuracy/sensitivity of their tool and it looks quite convincing that the large alignment library indeed boosts the likelihood of finding homologues.

A recent re-implementation of M-Coffee in the SeqAn (Doering et al., 2008) alignment library shows that the multiple alignment step of M-Coffee is about twice faster than standard consistency-based aligners based on pair-wise alignments like ProbCons or Promals (Rausch et al., 2008).

An ad hoc filtering procedure was applied to the genes consisting of one exon as single-exon alignments often result from spurious alignments, library contamination, background transcription of the genome, pseudogenes, and repeat elements [ 56].

Thus, if the first significant alignment with a library sequence aligns residues 25 125 at iteration i, later alignment boundaries at iteration i +1 and beyond are ignored; only the initially aligned region (25 125) is used to form the PSSM.

After NAST alignment, the aligned subset libraries were merged back into a fasta format.

Additionally, we assessed the percentage of alignment for each library.

mRNA-Seq read alignment, summarization and library normalization is tabulated in Additional files 1 (a-c).

Hayden and Willard [ 5] used k-mer analysis and repeat library alignment to describe canine centromere sequences.

After alignment of MIX library reads against CDSs, we observed that the distribution of reads attributed to each organism was similar for the TS, SMART and ENC samples (Additional file 1: Table S3).

When insertion/deletion polymorphisms are present in the alignment, the custom library for the subfamily included two consensus sequences: include-all-insertion consensus, where all insertions in the consensus alignment are included; and include-all-deletion consensus, where all deletions in the consensus alignment are included.

A file detailing library alignment and quantitation statistics is available as Additional file 4 While all sequencing reads were used for genome reannotation, aberrant clustering of transcriptome-wide expression patterns from two non-blood-fed female brain libraries resulted in their exclusion pool and the DESeq2 model was re-run.