Sentence examples for alignment is used for from inspiring English sources

A permutation alignment is used for grouping each extracted signal into the correct source output before transforming them into the time domain.

With reference genome in hand, alignment is used for detecting variants in samples.

Alignment seeds are generated by streaming reads against the reference suffix tree, and then Smith Waterman alignment is used for tuning.

Within the RecJ clade, eukaryotic CDC45 clusters with the archaeal homologs to the exclusion of bacterial RecJ family, at least when only the DHH domain alignment is used for tree construction and with a relatively low bootstrap support value of 59 (Additional File 1).

Sixteen metagenomic MCP sequences were aligned with the MCP sequences from complete virophage genomes, and the resulting multiple alignment was used for phylogenetic tree construction.

Alignment adjustment using Gblocks, which eliminates poorly aligned positions and divergent regions, resulted in few changes; therefore, the original, unadjusted alignment was used for the construction of phylogenetic trees.

Where appropriate, a longer alignment was used for the phylogenetic analysis (see supplementary data).

For phylogenetic analyses, a 582-bp region of the sequence alignment was used for amoA and a 1272-bp region for 16S rRNA.

This alignment was used for recombinant sequence screening (Fig 1) and generation of phylogenetic trees for different regions of the cap gene (Fig 2) as described in Materials and Methods.

This alignment was used for subsequent phylogenetic analysis.

The corrected alignment was used for phylogenetic analysis.