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The phrase "alignment is the same" is correct and usable in written English.
It can be used when discussing consistency or similarity in alignment, whether in a physical, conceptual, or metaphorical context.
Example: "In this project, we need to ensure that our goals and strategies are aligned; after all, alignment is the same across all departments."
Alternatives: "alignment remains consistent" or "alignment is identical."
Exact(1)
Finally, gap positions are introduced to the candidate sequence so that the final alignment is the same length as the reference database and positional homology is maintained using the nearest alignment space termination (NAST) algorithm.
Similar(59)
Small angle X-ray scattering confirmed that the direction of nanofiber alignment was the same as the direction of shear flow.
The lengths of alignments were also trimmed so all sequences in a given alignment were the same length.
The protocols of standard PCR reaction, purification, sequencing and sequence alignment were the same (above).
In Table 2, the upper and lower alignment are the same.
It is also noteworthy that several of the trends observed in sensory-deprived flies (such as AEP, PEP, and footprint alignment) are the same as those observed in faster wild type flies.
Although this general model of one-to-many alignments is the same, our method diverges from that of Ay et al. (2011) after this point.
The methods for alignments were the same as described for the species tree reconstruction.
We aligned each type of tRNA and adjusted them according to their secondary structures (the alignments are the same as those used in phylogenetic analyses), and then the pairwise similarities within each type of tRNA were calculated by pairwise alignment using BioEdit (see Additional file 2).
However, as we show, standard sequence logos are unable to discriminate between conserved patterns of codons and conserved patterns of nucleotides if the nucleotide composition of multiple alignment columns is the same.
The amount of bits needed to store the SA array (used in the post-alignment stage) is the same for all the aligners.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com