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The phrase "alignment is poor" is correct and usable in written English.
It can be used in contexts where you are assessing the quality or effectiveness of alignment, such as in design, strategy, or performance evaluations.
Example: "After reviewing the project outcomes, it became clear that the alignment is poor between the team's goals and the client's expectations."
Alternatives: "alignment is lacking" or "alignment is inadequate."
Exact(1)
If the parameter set for peak detection and alignment is poor (Figs. 2c and d), not all spikes can be identified, and the number of false positives in the residual chromatogram is higher (see Table 2).
Similar(59)
Aligned sequences were edited manually where alignment was poor, by comparison with BLASTP- and PSI-BLAST-derived data.
However, the size and distribution of ZnO nanorods were not regular and the vertical alignment was poor.
When the alignment was poor, the radiograph was taken again after adjusting the tube angle and position.
Macroscopic orientation is recovered, but the quality of alignment is still poor.
"The second most common reason for injury is poor alignment, and that is usually crummy teaching".
The easiest way to injure yourself in yoga is poor alignment, which a beginner may not recognize at all.
Another consequence is poor temporal alignment of cells as exemplified in Figure 2 figure supplement 1 (compare the t=0 time point for the non-targeting vs. ULK3 siRNAs in panel D; these cells are very different).
MTP 178 contains 925 kb of sequence from the homozygous region in RH, of which the alignment to the DM reference genome is poor or broken.
Given the methodology available here, we looked for an example in the other direction – a pair of proteins where the structural similarity score is poor, but an alignment using sequence and structure descriptors scored well.
In these cases, alignments will be poor and phylogenetic analyses may be prone to long-branch attraction.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com