The phrase "alignment is formulated" is correct and usable in written English.
It can be used in contexts where you are discussing the process of creating or establishing alignment in a particular situation or framework.
Example: "In our project, alignment is formulated through regular team meetings and open communication."
Alternatives: "alignment is established" or "alignment is created".
In this method, the alignment of PPI networks is formulated as a combination of the sequence similarity score of proteins and the matching score of protein interactions.
Building the ancestral orthologous alignments of sp1 and sp2 is formulated as a maximum-weight bipartite matching problem, namely: given G, find a matching M, which maximizes the sum of the weights of the edges that belong to M. Problem 1. Suppose L has nl match regions and R has n r match regions.
Building the ancestral orthologous alignments of sp1 and sp2 is formulated as a maximum-weight bipartite matching problem, namely: given G, find a matching M, which maximizes the sum of the weights of the edges that belong to M. We use an efficient algorithm for solving the maximum-weight bipartite matching problem (Johnson and McGeoch 1993).
This annotation is formulated as a classification problem where the classifier must identify valid sites in sequence alignments.
A party line is formulated and chosen.
Next, the proposed DPC method is formulated.
Therefore, a phylogenetic approach to mtDNA sequence alignment has been formulated [6] that has proven useful and thus forms the basis for haplotype annotation in the EMPOP database (http://www.empop.org).
Given these graph representations of biological networks, the network alignment problem can be formulated as an optimization problem whose goal is to find the optimal mapping - either one-to-one or many-to-many - among a set of graphs that maximizes a scoring function that assesses the goodness of a given mapping.
Coupling constraints for railway alignment and station locations are formulated and addressed, and station locations are generated while searching the railway alignment.
The union is formulating its own proposal.
