Sentence examples for alignment is derived from inspiring English sources

To conserve the frame of the coding sequences, the nucleotide alignment is derived from the amino acid alignment (in-house script) of the translated products of the pseudogene and its cognate gene obtained by GENEWISE.

In this case, a seed sequence alignment was derived from available protein structures by aligning residues that were superimposed in the three-dimensional space in ICM (Molsoft, San Diego).

E-values for the traditional structural alignment are derived by using the background information, i.e., the distribution of alignment scores for random proteins that are structurally dissimilar to the query protein.

The secondary structure displayed with the alignment was derived directly from the crystal structures of the human and yeast PCNA proteins and from the model of the VACV G8R protein.

Motif positions represented in the DNMT multiple sequence alignment were derived from a previous report [ 68].

The secondary structure features presented above the alignment are derived from the structures of AVR-PikD and Pikp-HMA.

The final alignment was derived from the above three alignments combined and then edited to remove gaps using the program GBLOCKS [ 55].

In cases where no alignment was derived from multi-exon genes, the protein with the smallest E value was selected as the parent.

This suggests that the etch pit alignments are derived from dislocation loops lying in the (001) and (101) slip planes whose emergent ends are parallel to the [010] direction.

Single best alignments were derived from SMS reads by accepting alignments with the highest quality scores.

Single-best quality alignments were derived using Bowtie by setting the –best and –k 1 parameters to report only the single highest quality alignment per read.