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The alignment is called Prowler, a fluid configuration in which Henderson and his mates sometimes avoided the classic three-point stance of pass rushers and run stuffers.
This is solved by the Viterbi algorithm and the resulting alignment is called a Viterbi alignment.
This alignment is called 'APII' in previous reports (Clark et al., 2011 ).
An alignment is called correct if it is close to any of the true locations.
Moreover, an alignment is called a pure alignment if it satisfies two conditions: (i) it contains at least three MIPS annotated proteins and (ii) there exists a complex in MIPS that covers >75% of its MIPS annotated proteins.
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Response: An alignment was called "widely conserved" when included the Magnoliophyta and at least two representatives (at least one must not be a vascular plant) from Cycadophyta, Coniferophyta, Gnetophyta, Moniliformopses, Lycopodiophyta, Marchantiophyta, Bryophyta, Charophyceae, Coleochaetophyceae, Zygnemophyceae, Mesostigmatophyceae, Chlorarachniophyceae or Glaucocystophyceae.
The Gotoh algorithm with the Dayhoff matrix (Dayhoff et al., 1978) and gap open costs of −12 and gap extension costs of −1 computing global alignments is called GOTOH in the following.
SNPs from the alignments were called using Samtools-0.1.7 [ 67] and output in pileup format.
Those RefSeq exons that have full extended alignments were called the clearly orthologous exons.
By analogy to sequence alignment, this problem is called PPI network alignment.
④ All alignments of Exon i is denoted as stage A i. The alignment being studied is called " state" (denoted as s i ), and s i = j means the j th alignment.
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