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The phrase "alignment is assumed" is correct and usable in written English.
It can be used in contexts where you want to indicate that a certain level of agreement or consistency is taken for granted without needing explicit confirmation.
Example: "In this analysis, we will proceed under the assumption that alignment is assumed among all stakeholders involved."
Alternatives: "alignment is taken for granted" or "alignment is presumed".
Exact(2)
In this way, particular textual personae will be construed according to the extent that the writer does assume such 'solidarity' with readers, and according to the particular value positions (via particular attitudinal assessments) of specific targets, and for which such writer-reader alignment is assumed.
An alignment is assumed to be optimal if it maximizes the alignment potential.
Similar(58)
The observations within each column of the alignment are assumed to evolve according to a phylogenetic tree t.
Thus, for large genomes, we may assume that adjacencies are independent (if rearrangements happen randomly), just as columns of an alignment are assumed to be independent in BC.
We consider an alignment of several sequences; all positions in this alignment are assumed to be independent, and thus may be modelled independently.
Rate heterogeneity at different positions in the alignment was assumed and modelled using a gamma distribution consisting of 8 categories [ 74].
The likelihood of each site is calculated given the particular ST and combined across the alignment or collection of alignments; in the latter case, all sites across all alignments are assumed to have evolved along precisely the same tree.
Polymorphisms can be distinguished from sequencing errors in post hoc analysis of the multiple-read alignments (McKenna et al. 2010) when the read alignments are assumed to be correct.
The dust grain alignment mechanism is assumed to be produced by paramagnetic relaxation.
The whole alignment X is assumed to be decomposed into K consecutive segments.
An pre-alignment of fingerprints is assumed which is rarely the case in practice (feature alignment represents a fundamental step in conventional fingerprint recognition systems).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com