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The semi-landmark alignment involved a generalized least squares procrustes superimposition followed by a distance minimizing procedure to mathematically remove differences between the curves attributable to random positioning of points along the curve [72] [74].
The G-patch is a glycine-rich domain discovered by sequence alignment, involved in protein-protein and protein-nucleic acid interaction.
Thus, the final COI alignment contained 69 nucleotide sequences and was 658 bp long, while the ITS2 alignment involved 28 sequences and consisted of 684 positions.
The total alignment involved ITS1, 5.8S rDNA, ITS2 and 1185-bp of the D1 D5 regions of the 28S rDNA (Ki and Han 2007).
The Bayesian analysis of the ITS alignment involved the construction of a discrete phylogeographical scenario for the evolution of the Soldanella genus.
Alignment involved the occasional introduction of gaps and, in one case, the deletion of one amino acid from one repeat sequence to avoid the introduction of a gap position into the repeat alignment.
Similar(54)
We have identified, for the first time, a slipped A·T·A·T tetrad alignment, involving recognition of Watson-Crick A·T pairs along the major groove edges of opposing adenine residues.
The first stage of MUMmer alignment involves identifying alignment anchors.
Graph alignment involves a subgraph isomorphism test that is proven to be NP-complete.
However, neither MaWISh nor NetworkBLAST reports any alignment involving the yeast NEF1 complex.
This fine scale alignment involves a local warping of each embryo described in detail previously (Fowlkes et al., 2008).
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