Sentence examples for alignment integrated from inspiring English sources

An alignment integrated tool in the Illumina-Solexa data processing package, ELAND, optimizes mapping of very short reads and allows at most only two mismatches between the read and the genomic sequence.

Solutions within the first class only exploit the information present in the overlapping area with respect to a single range image to determine separately the alignment between each pair of views, while multi-view alignment integrates all the available overlapping information collected from all acquired scans and exploits it in order to estimate the correct alignment.

Two algorithms, CE and TM-align integrated in STRAP [36] [38], are used to do their structure-based multiple sequence alignments.

Of the 16,250 genes matching a FL-cDNA, 14,555 gene models are now consistent with the FL-cDNA alignments, integrating 43,445 of the FL-cDNAs into the gene structure annotations.

Final consensus trees were produced for every phosphatase alignment integrating results from each method.

Currently, HIVE has the following alignment tools integrated and parallelized: HIVE-hexagon (native HIVE alignment tool), Bowtie (47) and BWA (48).

The fabricated filter polychromator is tested for its image quality, optical alignment, and integrated performance.

As the key steps of ISGAP, protein alignment was integrated to detect accurate exon regions, and an additional translation step was applied to extend the partial genes based on the detected exon regions (Fig.  1A).

For multiple sequence sets, all possible pairwise alignments are performed and fragments contained in these pairwise alignments are integrated greedily into a resulting multiple alignment.

For each gene, all splice sites of exons reported by sim4 alignments were integrated into a data structure called a splicing graph [ 27].

The identified TF sets of the six tree crops together with their basic features, such as Gbrowse to provide the genomic structure and position of each TF entry, gene and protein sequence information and domain alignments, were integrated into a database named TreeTFDB (http://treetfdb.bmep.riken.jp/index.pl) (Fig.  1).