Sentence examples for alignment input from inspiring English sources

Either way, one cannot escape the paradox that the phylogeny is made more accurate by ignoring error-free alignment input.

The comparison between MethylExtract and Bis-SNP needs to be based on identical alignment input files in BAM/SAM format.

The necessary NEXUS file format for the alignment (input) file was generated with the file conversion option available within the DAMBE program [ 84].

Four sets of BLAST outcome (walnut vs. grape, grape vs. walnut, walnut vs. walnut, and grape vs. grape) at cutoff P < 1E-5 and -m8 output option were merged as alignment input, GFF file in simple version for both grape and walnut coding genes were merged as coordination input, figures were plotted by using default parameters in the Linux environment.

Even with more comparable alignment inputs, the PSG method outperformed FDM and Cuffdiff on these data.

The results are shown for both single sequence and alignment inputs.

It can be seen that, for both single-sequence and alignment inputs, the odds of observing the real sequence increase dramatically in the joint model.

SOV and Q3 results are, respectively, 1.8% and 0.1% better than those produced directly from a profile, and this rises to 4% and 1.5% when using single sequence rather than alignment inputs.

Notable characteristics of the output k-mer distributions Table 3 shows geometric averages over the three training sets for alignment inputs for some of the most encouraged and discouraged k-mers.

RNA SALSA also requires a "pre-alignment" input file, which was obtained from the E-INS-i algorithm of the MAFFT alignment package [ 81], using default settings.

The tool expects pairwise alignments alignments as input and hence cannot be used "as is" with plain fragment files produced from external applications.