Sentence examples for alignment information for from inspiring English sources

Each matrix stores the frequency for each nucleotide at every position of the putative motif in order to summarize the alignment information for the TF with a binding site.

Alignment information for the best ten subject sequences was retained.

Similarly, Ensemble's MotifFeatures.gff table contains the alignment information for the TFBS element matrix documented in JASPAR [by MOODS software (42)] for human and mouse.

Using more stringent parameters (e.g., Length fraction = 0.8, Similarity = 0.9) in CLC Genomics Workbench 4.8, we obtained a total of 32,619 contigs in FASTA format and the relevant SAM file [ 12] that contains sequence alignment information for all the contigs and their component sequence reads.

The key to the algorithm is the development of a sensitive domain boundary profile that can calibrate composite structural and sequence alignment information from the multiple threading templates for precise domain assignment.

BLAST is the foundation tool for providing alignment information and findings for genomic differences through sequence similarity search is incorporated into the FusoBase.

We have shown that split-read alignment information is very effective for predicting SV and other mutations in haploid microbial genomes, in agreement with other studies [ 11, 12].

The marsupial alignment information was used to look for potential gene duplications and we report evidence for copy number expansion of the alpha amylase gene, and of an aldehyde reductase gene.

The program also generated an html file for each contig, including the alignment information and SNP information.

The resulted alignment information, including confidence score [ 42], was used for the following statistics, such as mapping length ratio calculation (alignment length to the fragment length).

A BHIC is a cluster of conservation between species in which the alignment contains information for every species considered for the alignment.