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An alignment is considered 'complete' if at least 70% of a given protein model aligns to a contig in the assembly, while a partial alignment indicates that a statistically significant portion of the protein model aligns.
Sequence alignment indicates that most GmTPSs contain the conserved aspartate-rich DDX2D motif, and two clades encoded by TPS-a and TPS-b contain variations of an arginine-rich RRX8W motif.
Sequence alignment indicates that the C8α is well conserved during the evolution process from sharks to mammals, with the same modular architecture as well as the identical cysteine composition in the mature protein.
Our preliminary study using sequence alignment indicates that the pattern of homologs is consistent with the hypothesis that a WGID occurred in a type-A chromosome (C. acetobutylicum) and not in a type-D chromosome (Synechocystis), as shown in Fig. 11.
Our sequence alignment indicates that the conservation in the extreme N-terminus of merlin extends to the first 27 residues.
The sequence alignment indicates that the highly repeated 565-bp-region is indeed lost in the Adiantum cp genome.
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Of particular interest, a 29 Å reflection was observed to have meridional alignment indicating that the structural periodicity it arises from is aligned perpendicular to the film plane and thus perpendicular to the αSβ1 tape long axis.
Sequence alignment indicated that monothiol Grxs all possess a long loop in this region, whereas the dithiol Grxs usually have a short loop (Fig. S3).
From Fig. 5a, it is clear that the scattering distributions of the Si substrate and that of the SiGe thin film are in perfect alignment, indicating that the SiGe thin film is completely commensurate with the Si substrate.
Peptide alignment indicated that, including OsLAP6/OsPKS1, all 27 proteins had high conservation of active sites, product-binding sites, and substrate-binding sites (Additional file 1: Figure S4), implying that these functional sites are evolutionarily conserved in land plants.
Interestingly, all except two OsUBC13 introns are different from that of AtUBC13B, consistent with the amino acid alignment indicating that OsUBC13 is more closely related to AtUBC13B than to AtUBC13A.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com