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Krissinel, E. & Henrick, K. Secondary-structure matching (SSM), a new tool for fast protein structure alignmatchingthree dimenSSMns.
To get enough sequences, we split each alignment in three: first exon, second exon, and the rest of gene, using the annotation of a reference species.
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Figure 4 shows pre- and post-operative leg alignment in two cases.
Conservation analysis of SEP3 (A) and SEP12 (B) with clustal multiple alignment in six species.
BFAST performs alignment in two steps.
Accordingly, we have subdivided the yaaW alignment in two sections.
Contemporary aaRS, however, violate this alignment in two ways.
We measured patellar alignment in two planes: sagittal and transverse (axial).
In addition, we partitioned the alignment in four blocks differing in the level of divergence among microsporidian sequences.
To test for recombination, we divided the infB alignment in two at the point where this curve changes trend and built phylogenetic trees for both partial alignments (Fig. 7).
We re-analyzed our zebrafish finTRIM group A dataset of B30.2 by subdividing the alignment in two parts, containing the sequence regions before or after the detected recombination point.
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